modos.metabolomics.mztab

Module for extracting metabolomics metadata from mzTab-M 2.0 files.

Functions

load_mztab(path)
get_samples(mz)
get_assay(mz, data_id)
extract_metadata(instance, base_path)
extract_tables(path)

Module Contents

modos.metabolomics.mztab.load_mztab(path)

Parameters:

path (pathlib.Path)

Return type:

pyteomics.mztab.MzTab

modos.metabolomics.mztab.get_samples(mz)

Parameters:

mz (pyteomics.mztab.MzTab)

Return type:

list[modos_schema.datamodel.Sample]

modos.metabolomics.mztab.get_assay(mz, data_id)

Parameters:

• mz (pyteomics.mztab.MzTab)

• data_id (str)

Return type:

modos_schema.datamodel.Assay

modos.metabolomics.mztab.extract_metadata(instance, base_path)

Parameters:

• instance (modos_schema.datamodel.MassSpectrometryResults)

• base_path (pathlib.Path)

Return type:

list[modos_schema.datamodel.Assay | modos_schema.datamodel.Sample]

modos.metabolomics.mztab.extract_tables(path)

Parameters:

path (pathlib.Path)

Return type:

dict[str, pandas.DataFrame]