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Slot: sequence_md5

The pre-computed hash uniquely representing a biological sequence. Calculated as the MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM).

URI: modos:sequence_md5

Applicable Classes

Name Description Modifies Slot
ReferenceSequence A contiguous sequence of DNA part of a reference coordinate system (genome as... no

Properties

  • Range: String

  • Regex pattern: ^[a-f0-9]{32}$

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sdsc-ordes/modos-schema

LinkML Source

name: sequence_md5
description: The pre-computed hash uniquely representing a biological sequence. Calculated
  as the MD5 of the upper-case sequence excluding all whitespace characters (this
  is equivalent to SQ:M5 in SAM).
from_schema: https://w3id.org/sdsc-ordes/modos-schema
rank: 1000
alias: sequence_md5
domain_of:
- ReferenceSequence
range: string
pattern: ^[a-f0-9]{32}$