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Enum: DataFormat

URI: DataFormat

Permissible Values

Value Meaning Description
CRAM EDAM:format_3462 Referenced-based compression of alignment format
FASTQ EDAM:format_1930 FASTQ short read format with sequence and any type of quality scores
Zarr EDAM:format_3915 Chunked, compressed N-dimensional arrays
FASTA EDAM:format_1929 FASTA sequence format including NCBI-style IDs
VCF EDAM:format_3016 Variant call format for sequence variation
BCF EDAM:format_3020 Binary call format, for efficient storage of sequence variation
mzTab EDAM:format_3681 tab-delimited format for mass spectrometry-based proteomics and metabolomics ...
TSV EDAM:format_3475 Tab-separated values format
JSON EDAM:format_3464 JavaScript Object Notation format

Slots

Name Description
data_format Data/file format associated with a data entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sdsc-ordes/modos-schema

LinkML Source

name: DataFormat
from_schema: https://w3id.org/sdsc-ordes/modos-schema
rank: 1000
permissible_values:
  CRAM:
    text: CRAM
    description: Referenced-based compression of alignment format.
    meaning: EDAM:format_3462
  FASTQ:
    text: FASTQ
    description: FASTQ short read format with sequence and any type of quality scores.
    meaning: EDAM:format_1930
  Zarr:
    text: Zarr
    description: Chunked, compressed N-dimensional arrays.
    meaning: EDAM:format_3915
  FASTA:
    text: FASTA
    description: FASTA sequence format including NCBI-style IDs.
    meaning: EDAM:format_1929
  VCF:
    text: VCF
    description: Variant call format for sequence variation.
    meaning: EDAM:format_3016
  BCF:
    text: BCF
    description: Binary call format, for efficient storage of sequence variation.
    meaning: EDAM:format_3020
  mzTab:
    text: mzTab
    description: tab-delimited format for mass spectrometry-based proteomics and metabolomics
      results.
    meaning: EDAM:format_3681
  TSV:
    text: TSV
    description: Tab-separated values format.
    meaning: EDAM:format_3475
  JSON:
    text: JSON
    description: JavaScript Object Notation format.
    meaning: EDAM:format_3464