Class: Assay

A coordinated set of actions designed to generate data from samples.

classDiagram class Assay click Assay href "../Assay" NamedThing <|-- Assay click NamedThing href "../NamedThing" Assay : description Assay : has_data Assay --> "*" DataEntity : has_data click DataEntity href "../DataEntity" Assay : has_sample Assay --> "*" Sample : has_sample click Sample href "../Sample" Assay : id Assay : name Assay : omics_type Assay --> "1..*" OmicsType : omics_type click OmicsType href "../OmicsType" Assay : sample_processing

Inheritance

NamedThing
- Assay

Slots

Name	Cardinality and Range	Description	Inheritance
has_sample	* Sample	Biological sample included or described by a given thing	direct
has_data	* DataEntity	Data entity included in a given collection	direct
omics_type	1..* OmicsType	The type of omics considered	direct
sample_processing	* Uriorcurie	Codes describing sample processing, preparation or handling steps	direct
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing

Usages

used by	used in	type	used
MODO	has_assay	range	Assay

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/sdsc-ordes/modos-schema

Mappings

Mapping Type	Mapped Value
self	modos:Assay
native	modos:Assay

LinkML Source

Direct

name: Assay
description: A coordinated set of actions designed to generate data from samples.
from_schema: https://w3id.org/sdsc-ordes/modos-schema
see_also:
- NCIT:C42790
- sphn:Assay
is_a: NamedThing
slots:
- has_sample
- has_data
- omics_type
- sample_processing

Induced

name: Assay
description: A coordinated set of actions designed to generate data from samples.
from_schema: https://w3id.org/sdsc-ordes/modos-schema
see_also:
- NCIT:C42790
- sphn:Assay
is_a: NamedThing
attributes:
  has_sample:
    name: has_sample
    description: Biological sample included or described by a given thing.
    from_schema: https://w3id.org/sdsc-ordes/modos-schema
    rank: 1000
    is_a: has_part
    alias: has_sample
    owner: Assay
    domain_of:
    - Assay
    - DataEntity
    range: Sample
    multivalued: true
  has_data:
    name: has_data
    description: Data entity included in a given collection.
    from_schema: https://w3id.org/sdsc-ordes/modos-schema
    rank: 1000
    is_a: has_part
    alias: has_data
    owner: Assay
    domain_of:
    - Assay
    range: DataEntity
    multivalued: true
  omics_type:
    name: omics_type
    description: The type of omics considered.
    from_schema: https://w3id.org/sdsc-ordes/modos-schema
    rank: 1000
    alias: omics_type
    owner: Assay
    domain_of:
    - Assay
    range: OmicsType
    required: true
    multivalued: true
  sample_processing:
    name: sample_processing
    description: 'Codes describing sample processing, preparation or handling steps.

      The order of the codes should reflect the order in which the steps were performed.

      Should be codes from [MSIO](https://bioregistry.io/registry/msio) or [OBI](https://obofoundry.org/ontology/obi.html)].

      '
    from_schema: https://w3id.org/sdsc-ordes/modos-schema
    rank: 1000
    list_elements_ordered: true
    alias: sample_processing
    owner: Assay
    domain_of:
    - Assay
    range: uriorcurie
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/sdsc-ordes/modos-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Assay
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/sdsc-ordes/modos-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Assay
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/sdsc-ordes/modos-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Assay
    domain_of:
    - NamedThing
    range: string