modos.io
========

.. py:module:: modos.io


Attributes
----------

.. autoapisummary::

   modos.io.ext2loader


Functions
---------

.. autoapisummary::

   modos.io.extract_cram_metadata
   modos.io.dict_to_instance
   modos.io.get_loader
   modos.io.parse_instance
   modos.io.parse_attributes
   modos.io.parse_multiple_instances
   modos.io.extract_metadata


Module Contents
---------------

.. py:function:: extract_cram_metadata(cram)

   Extract metadata from the CRAM file header and
   convert specific attributes according to the modo schema.


.. py:function:: dict_to_instance(element)

.. py:data:: ext2loader

.. py:function:: get_loader(path)

   Get a loader based on the file extension using regex.


.. py:function:: parse_instance(path, target_class)

   Load a model of target_class from a file.


.. py:function:: parse_attributes(path)

   Load model specification from file into a list of dictionaries. Model types must be specified as @type


.. py:function:: parse_multiple_instances(path)

   Load one or more model from file. Model types must be specified as @type


.. py:function:: extract_metadata(instance, base_path)

   Extract metadata from files associated to a model instance